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ZOOM

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PatternHunter

ZOOM - Zillions Of Oligos Mapped!

ZOOM provides answers for next generation sequencing analysis. Developed to be highly accurate, flexible, and user-friendly with speed being a critical priority

ZOOM is fast. A single CPU with only 6.5G of memory is capable of mapping 5x coverage of a human genome in one day using ZOOM at full sensitivity and allowing for 2 mismatches

ZOOM is flexible:

  • Easily map reads 15 to 64bps long
  • Handles any numbers of mismatches & gaps (insertions and deletions)
  • Accounts for read sequence quality scores
  • Integrated multiple sequence alignment for SNP identification and analysis
  • Supports Solexa* and SOLiD* instruments
  • Accounts for paired-end reads

ZOOM is Scalable. Time complexity increases approximately linearly with respect to genome length and reads count.

False positives problem? ZOOM increases uniquely mapped reads with quality score and paired end statistics. This reduces ambiguity of read mapping and increase the likelihood of identification